Plant MITE

SE2850918

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9923
Sorghum bicolor
SE2850918
PIF/harbinger
To15
chromosome_10:48912047-48912830
TTA
AGAGCATCTCCAACAGTTATGCAATTGGACTTTGC

Secondary structure and sequence

TSD TIR

5'

3'

TT  A                          C     -----A    TGAAATTTGCCAAAAATCTTAAAAATGGCTCTCCAACAGTTTTGCATTTGACTTATGCATTTTGGCAAACTTGGCATTTGATGGACCAAACTTGGCATTTTTGCATAGGCACAATGGCTTGGCAATTTTGATATCCCGAGAATCTTGGACTCCTTGTCGTGCTCGTACTCCCCACGTCGTGGTAGTTTCCCGCGATACGAGTCCTCGCACACGATTATTCTCTTTCCCCTGCGCGCCGCCTCCTTTCTTGGCGCGGGGACGAAGGAGATCCATCGCCGCCTCCTTTTGTTGCAGCGACGCGAGGCTAGGAGATCCATCACCGCCTCCTCTCCTTCCTTCATGCGACG
  AG GCATCTCCAACAGTTATGCAATTGGA TTTGC      TTCT                                                                                                                                                                                                                                                                                                                                                           
  || |||||||||||||||||||||||||| |||||      ||||                                                                                                                                                                                                                                                                                                                                                           C
  TC CGTAGAGGTTGTCAATACGTTAACCT AAACG      AACC                                                                                                                                                                                                                                                                                                                                                           
AT  C                          T     GTAAAC    TCAAACGGTTCAGGGATTTGCAAAACGGTTTCTTTTTTATTCAAGTAGAGGTTCACAAACCGTAAAAACTGAACCGTAAAGGGTTTTATCACCTGGGTTGATAAAAACAGGCCCTTAGAAAGTAGAAGCGCCCTTTAAAAGAGCGCACAGCGCGCCCTCGGGCAGCGCGCGTTAAAAAAGCGAGCAGCGGCGGTTAACAGAGCGCGCAGCGCGCCGGCACAGCAGGGCGTTCAGGTGCAGCGGCGAACCAGGTCCAGCAGCTCTAGGCTAGAGCAGCGACGCTAGCTAGAGGATCGGAGTGCAGCGACGTTGTTTTACTGCGCCGCTACCTAGAGGATCGACCTCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850918

TTAGAGCATCTCCAACAGTTATGCAATTGGACTTTGCATTCTTGAAATTTGCCAAAAATCTTAAAAATGGCTCTCCAACAGTTTTGCATTTGACTTATGCATTTTGGCAAACTTGGCATTTGATGGACCAAACTTGGCATTTTTGCATAGGCACAATGGCTTGGCAATTTTGATATCCCGAGAATCTTGGACTCCTTGTCGTGCTCGTACTCCCCACGTCGTGGTAGTTTCCCGCGATACGAGTCCTCGCACACGATTATTCTCTTTCCCCTGCGCGCCGCCTCCTTTCTTGGCGCGGGGACGAAGGAGATCCATCGCCGCCTCCTTTTGTTGCAGCGACGCGAGGCTAGGAGATCCATCACCGCCTCCTCTCCTTCCTTCATGCGACGCTACTCCAGCTAGGAGATCCATCGCCGCGTCATTTTGTTGCAGCGACGTGAGGCTAGGAGATCGATCGCAGCGACGAGATCGGATCTCGACGACCTGGACCAAGCGGCGACGTGGACTTGCGGGACGACACGGCCGCGCGACGCGCGAGACAATTGGCGGCGACGAGCGAAAAAATTGCGCGCGACGGGCTCCCGCGCGACACGCGAGAAAATTTCCCGCGAAGATGAAAGATTCCCGGACAAAAATAGTTGGGTCCACTATTTTGGGAAATGCCAAGTCAAAAATGCCAAACACTTGGAGATGAACTTATTTTTTCTTTGGCAAAACGTTTAGGGACTTGGCAAACTCCAACAAATGGCAAATTCCAATTGCATAACTGTTGGAGATGCCCTTA

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