Plant MITE

SE2850922

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9927
Sorghum bicolor
SE2850922
PIF/harbinger
To69
chromosome_7:54724252-54724488
TTA
AGGCCTTGTTTAGTTTACAAAATTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                A     T     GTTT      ACT - AG -     ---  TTTT   T  --   ACATTGTCCAATCACGAAGTGACTAGGCTCAAAAGATTCATCTCACAAATTACA
  AGGCCTTGTTTAGTTT CAAAA TTTTT    TTGGGT   G T  T ATTTC   GT    ATT GA  CAA                                                      
  |||||||||||||||| ||||| |||||    ||||||   | |  | |||||   ||    ||| ||  |||                                                       
  TCCGGAACAAATCAAG GTTTT AAAAG    TTCTAA   G G  G AGTGT   TT    AGA AA  AGC                                                      
AT                C     T     ----      --- G -- C     AGC  ----   -  CC   GTACGTACCTCGTAATTTATATCTGCTTTTATTTTTGATTGACGTGTCAAATGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850922

TTAGGCCTTGTTTAGTTTACAAAATTTTTTGTTTTTGGGTACTGTAGTATTTCGTTTTTATTTGACAAACATTGTCCAATCACGAAGTGACTAGGCTCAAAAGATTCATCTCACAAATTACAGGTAAACTGTGCAGTTAGTTTTTATTTTCGTCTATATTTAATGCTCCATGCATGCGACCAAAGATTCGATGTGACGGGGAATCTTGAAAATTTTTGCGAACTAAACAAGGCCTTA

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