SE2830926

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9931
  • Sorghum bicolor
  • SE2830926
  • hAT
  • Hat63
  • chromosome_10:14937880-14938372
  • GGGGGAAG
  • TAAGGGTGGCAATGGGGCGGGTTCGGATCGGATG

Secondary structure and sequence

TSD    TIR
5'



3' 
GGGGGAAG           ATG    G    --C  A       -    CTAT  GCACCCGAACCCAAAACTTGAAATCGAAATCTAAAACCGAACCGAACACCAATCCGGTAATAACTCCTCTCCAAAACCAAACCCACGGATACCCGAAACCTGAATGGATACCCAAAACCCGCTTTCTATGTCAACATAATAATAGCAATAAGTACTTTCTATAAATATATACATAATATATATACACATATTTACA
        TAAGGGTGGCA   GGGC GGTT   GG TCGGATG AAGT    GT                                                                                                                                                                                                    
        |||||||||||   |||| ||||   || ||||||| ||||    ||                                                                                                                                                                                                     
        ATTCCTACCGT   CCCG CCAA   CC AGCCTAT GGCG    CC                                                                                                                                                                                                    
GAAGGGGG           -CG    G    AAT  -       A    ----  CAGACCCCTACTAAAAAATGGGTGCCGGGACAAACCAAAAGGTGGGCATCTATGGGTTGCCTATAGGTTTTATTCAGTAATTTTAATTAAAAATATAAAATATTATACTATTATCATTGAACAAATGAATCTAATACTTTAAATAAAATTCGATTGAGTACTTTTATAAATACAAAATAACAGAAAACAAATATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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