SE2850928

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9933
  • Sorghum bicolor
  • SE2850928
  • PIF/harbinger
  • To18
  • chromosome_2:67111768-67112011
  • TTA
  • AGGCCTTGTTTAGTTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             -    CCCTAAAATCCAAACAACTTTT      TTCTCATCACATCGAATCTTGCGACACATGCATAGAACATTAAATATAGATAAAAATAACTAATTATATAGTTTGCTT
  AGGCCTTGTTTAG TTCA                      TAAGAT                                                                              
  ||||||||||||| ||||                      ||||||                                                                               
  TCCGGAACAAATC AAGT                      TTTGAC                                                                              
AT             T    -------AAAAAAACCTAAAAC      ATCGTTAAAATAAACATAAACCGTTAATAATAAGTTGATATCTAATTAATCTGAGTTTTTTTAGTAGAGCATTTAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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