Plant MITE

SE2850929

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9934
Sorghum bicolor
SE2850929
PIF/harbinger
To3
chromosome_10:41926779-41927064
CTA
AGGCCTTCTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

  CTA       C     -AT   -     TTTT    ---  ---    TACTGTAGCATTTTTGTTTGTTTATGACAAATATTATCCAATCATGACTAACTAGGATCAAAAGATTCATCTCACGATTTACAGCTAAACATCAAAAGA
     AGGCCTT TTTAG   GTG AAAAC    TGGA   TT   TTGA                                                                                                   
     ||||||| |||||   ||| |||||    ||||   ||   ||||                                                                                                   T
     TCCGGAA AAATC   TGG GTTTT    GGTT   CA   GTTC                                                                                                   
GTAAA       C     AAG   G     ---T    TTT  AAA    TAAAGAGCAGTGTAACTTAGAACGCCGTGTACGTACTTCGTAATTTATATCTACTTTTGTTTTTGATTAATGTGTCAAATCGACATTTAGCGCTCTACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850929

CTAAGGCCTTCTTTAGATGTGAAAACTTTTTGGATTTTGATACTGTAGCATTTTTGTTTGTTTATGACAAATATTATCCAATCATGACTAACTAGGATCAAAAGATTCATCTCACGATTTACAGCTAAACATCAAAAGATTCATCTCGCGATTTACAGCTAAACTGTGTAATTAGTTTTTGTTTTCATCTATATTTAATGCTTCATGCATGTGCCGCAAGATTCAATGTGACGAGAAATCTTGAAAACTTTTTGGTTTTTGGGGTGAACTAAACAAGGCCTAAATG

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