SE2850930

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9935
  • Sorghum bicolor
  • SE2850930
  • PIF/harbinger
  • To1
  • chromosome_10:38300540-38300788
  • TTA
  • AGGCCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C           ACACC        -CAAAACTTTA        CTCGTCACATCGAATCTTGCGATACATGTATGGAGTATTAAATATAGATAAAAATAAAAACTAATTACACAGTTTGTT
  AGG CTTGTTTAGAT     CAAAAACT           CAAGATTC                                                                              
  ||| |||||||||||     ||||||||           ||||||||                                                                               
  TCC GAACAAATCTA     GTTTTTGA           CTGTGACA                                                                              
AT   C           ----C        AAAACCTAAAA        TCGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTACCTCATTGATCCGAATTTTCTAAGCAGAGCGCTAAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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