Plant MITE

SE2810934

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9939
Sorghum bicolor
SE2810934
Tc1/Mariner
St38
chromosome_1:10253167-10253406
TA
TACTCCCTCCGTCTTGTAAT

Secondary structure and sequence

TSD TIR

5'

3'

         C          ATAGC        CCATTCAAAA      --------   AAATATAATGCATTCTAGAGGACAAAAACCAATTTTGCATTAAATACTTAAAATTTATCAACCAATCA
TACTCCCTC GTCTTGTAAT     GCATTCTA          TTTGTC        CTC                                                                    
||||||||| ||||||||||     ||||||||          ||||||        |||                                                                     
ATGAGGGAG TAGGACATTA     CGTAAGAT          AATTCT        CTC                                                                    
         A          ----A        ----CATTAA      GTTTAATT   TCTTGTATTTTCTCGTATATGGGAGTAAAATAAAGGATTAATCTGCGATAGTAGTTGTACTAGTTACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810934

TACTCCCTCCGTCTTGTAATATAGCGCATTCTACCATTCAAAATTTGTCCTCAAATATAATGCATTCTAGAGGACAAAAACCAATTTTGCATTAAATACTTAAAATTTATCAACCAATCACCATTGATCATGTTGATGATAGCGTCTAATTAGGAAATAAAATGAGGGTATATGCTCTTTTATGTTCTCTCTTAATTTGTCTTAAAATTACTAGAATGCAATTACAGGATAGAGGGAGTA

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