SE2850935

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9940
  • Sorghum bicolor
  • SE2850935
  • PIF/harbinger
  • To16
  • chromosome_3:1234078-1234370
  • TAA
  • AGGGCACTCGCAATGCAGACTCTATCATAGAGTCTAAAGTCATTTATTACCTCGAACAATGTGGACTTAGAGTCTAAATAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                                        C                                          ---   CTCACAATGCAAGACTCTATCACAGAGTCCAAGATAATTAATTATATATTATTTATA
  AGGGCACTCGCAATGCAGACTCTATCATAGAGTCTAAAGT ATTTATTACCTCGAACAATGTGGACTTAGAGTCTAAATAAGG   GCA                                                         
  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||                                                          
  TCCCGTGAGTGTTACGTCTGAGATAGTATCTCAGATTTCA TAAATAATGGAGTTTGTTACACCTGAATCTCAGATTTATTCT   CTT                                                         
AA                                        A                                          GAA   CAGAATAAAAAAAGATGGAGAAAGAAGTTATTTATACAACGGTGTAGTCGTTTTATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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