SE2850940

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9945
  • Sorghum bicolor
  • SE2850940
  • PIF/harbinger
  • To16
  • chromosome_1:21073336-21073755
  • TTA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
TT         ---   -----         ---     -   AAGTTATTTATTACCTCGAACAATGTGAATTTGGAGTCTAAATAAGACTTGGAGTTTTGTTTTTTCTACCTCTTTCTTCAATAAATATGCTGCCACATCAGCAAAATATCATAAATATTATGTAATTAATTGTCTTGGACTCTATAATAGAGTCTTGCATTGTGAGTGCCCTT
  AGGGCACTC   ACA     ATGCAGACT   CGAGT CTA                                                                                                                                                                             
  |||||||||   |||     |||||||||   ||||| |||                                                                                                                                                                              
  TCTCGTTCA   TAT     GACATTCGA   ATGTA GAC                                                                                                                                                                             
AT         TAA   CACCC         CCG     C   TATACCTCTTCTCTTCCCTCCTCTCTCTCCTCTTCGTCTTACATTCGAATGTCCGTCGAATCTGTGTTTTTGGTTCTTTGAAACACTCTCTCTATTCACCTGGTACATAATTGATAACATACCCACCCGACGTTCTTACGAGTCGTCCACCTGACATAATAATTTGAACGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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