Plant MITE

SE2810941

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9946
Sorghum bicolor
SE2810941
Tc1/Mariner
St6
chromosome_2:45157892-45158152
TA
TACTCCCTCTGTCCCTGAAAGCTTCAATTCCTAGA

Secondary structure and sequence

TSD TIR

5'

3'

                       T     C     ATCC  -GCC       C  GTTT            C                 -----CAA    CATAACATAAAATGAATATCTTATGAAAATATA
TACTCCCTCTGTCCCTGAAAGCT CAATT CTAGA    GT    AGTCAAA TT    AACTTTGACCAA TTTATAGAAAAGAGCAT        TATG                                 
||||||||||||||||||||||| ||||| |||||    ||    ||||||| ||    |||||||||||| |||||||||||||||||        ||||                                  
ATGAGGGAGGCAGGGACTTTCGA GTTAA GATCT    CA    TCAGTTT AA    TTGAAACTGGTT AAATATCTTTTTTTGTG        TATC                                 
                       C     A     -CAA  GAAT       T  AACT            T                 ATTCTAAA    ATGGTTTAATTATGGTAATCTAAATAGTAACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810941

TACTCCCTCTGTCCCTGAAAGCTTCAATTCCTAGAATCCGTGCCAGTCAAACTTGTTTAACTTTGACCAACTTTATAGAAAAGAGCATCAATATGCATAACATAAAATGAATATCTTATGAAAATATATTCAATGATAAATCTAATGGTATTAATTTGGTACTATAAATCTTAGTGTTTTTTTCTATAAATTTGGTCAAAGTTTCAAAATTTTGACTTAAGACAACTCTAGAAATTGCAGCTTTCAGGGACGGAGGGAGTA

Copy Cancel