Plant MITE

SE2850942

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9947
Sorghum bicolor
SE2850942
PIF/harbinger
To2
chromosome_9:59012393-59012633
TTA
AGGCCGTGTTTA

Secondary structure and sequence

TSD TIR

5'

3'

TT     G      --     -  -- G -----   AA    -- CG GACACTGTAACATTTTCGTTTGTTTGTGGTAATTATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTAC
  AGGCC TGTTTA  GTTGG TG  A G     AGA  AATT  T  T                                                                                
  ||||| ||||||  ||||| ||  | |     |||  ||||  |  |                                                                                 
  TCCGG ACAAAT  AGGTG GT  T A     TTC  TAAG  A  C                                                                                
AT     A      GA     G  TT - AAAAG   --    GG -- AGTGTAGCTTAGAAATCTGTGTACGTACCTCATAATTTACATCTGCTTTTATTTTTGATTAACGTGTCAAACCAGCTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850942

TTAGGCCGTGTTTAGTTGGTGAGGAGAAAAATTTCGTGACACTGTAACATTTTCGTTTGTTTGTGGTAATTATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTACATTTCGACCAAACTGTGCAATTAGTTTTTATTTTCGTCTACATTTAATACTCCATGCATGTGTCTAAAGATTCGATGTGACAGGGAATCTTGAAAAATTTTGGGTGGAAGTAAACAAGGCCTTA

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