SE2850948

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9953
  • Sorghum bicolor
  • SE2850948
  • PIF/harbinger
  • To31
  • chromosome_2:14527058-14527341
  • TTA
  • AGGCCCTGTTTAGATTTGAATTTTTTTGGCCAAAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C                T        -      T ----------    TTTTTTTATGGTCAGAACACGCGAAAAATTTTAGGTGTTTAGTTTGATAAATTTTTTTCTGACACAACTTAGGCTGCATGCATTTGCAGTTGT
  AGG CCTGTTTAGATTTGAA TTTTTTGG CCAAAG G          GTAA                                                                                             
  ||| |||||||||||||||| |||||||| |||||| |          ||||                                                                                             C
  TCC GGACAAATCTAAACTT AAAAAACC GGTTTC C          CACC                                                                                             
AT   C                T        A      T TTTTTTTTAA    TTAACCTCGGACACTTGATTTGCCCCGGTTTTTTAAAACCGCGTTTTTAAAACCCGACGTTGACACGTGCGTGAGGGTATCTTTGGGTGGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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