SE2850949

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9954
  • Sorghum bicolor
  • SE2850949
  • PIF/harbinger
  • To93
  • chromosome_10:58281626-58281967
  • TTA
  • AGAGCAACTTCAGCCCAAGTCCCTAAACTAAGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             C   -----------AG      AA       CTTAA      A -     AGCTATGATAAAAAAAAGTAGGGGCTCAAATTAAGACCCAACTCCAATGGAAAAAACAGACCAAGTCCTTATCTCACATATTCTTGTCTTGATTTATGGGTGGGGAGAGGAAA
  AGAGCAACTTCAG CCA             TCCCTA  CTAAGTC     ACTTTT T TTACA                                                                                                                 
  ||||||||||||| |||             ||||||  |||||||     |||||| | |||||                                                                                                                 G
  TCTCGTTGAGGTT GGT             AGGGAT  GATTTAG     TCCCTG A CTAAG                                                                                                                 
AT             A   GGAGTATTTGTTA      AA       ----A      - A     TTTTTTTAGTTGAAGTTGGGTGGAGAATGAACCCGAGGGTAAAAGATACGGGAGGGTTTAATATCAAAGTCGGGGAGTGTAGATCTTGGGGGTATAGATCACCTAGGGTGGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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