SE2830952

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9957
  • Sorghum bicolor
  • SE2830952
  • hAT
  • Hat64
  • chromosome_3:51865266-51865866
  • TTTGTCCC
  • CAGTGGCGGAGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTGTCCC   T      G   --    ATTTTGACGTCTAGGGCCACTAATAAAGCACACACACCGTTTACATTGAATCAAGATATCAGTTGTACCAAGTCTAATACCGATAGATAACAAAAATAGCTTATAAATACATAGTTCGAGATAAAAATCTTAATTTCAAATTTAAATCCATAACATGAAAGTGGATAAAAATCTTAATTTCAAACTTAAATCCACTCGCGCTCGGCCATCTAGGGTGCGTTTGGTTGGAGAGCGTGGAAGAGGGATGGAATAACTATTATTGTGTTTGGTTGG
        CAG GGCGGA CTC  GTCA                                                                                                                                                                                                                                                                                 
        ||| |||||| |||  ||||                                                                                                                                                                                                                                                                                 A
        GTC CCGCCT GAG  GGAT                                                                                                                                                                                                                                                                                 
CCCTGTTT   C      A   GT    CCCGGTGATCCCGGAACCGGGATGAACACCTGGTTTTAAAGAATTATGAGTAAAAATTAAAAAACCTAATATAAGTAGTGGTATCTGACGGAGCTAGTAGGAGAGAGTAGAGAACGAACACGGGCGAAACATCACACAATGAGGAAGGACCAAGGGAGTGCAAAAGTTAGGGTCGAGTATCACATGAGGTCCCGTAGCACCAACCGAAACAACAACAAAAGATCGATTTGTGCAGGAAGAAACGTCAATAATCGTTTCTGTATTAAGATAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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