SE2850958

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9963
  • Sorghum bicolor
  • SE2850958
  • PIF/harbinger
  • To1
  • chromosome_7:58257377-58258068
  • TAA
  • AGGCCTTTTTAG

Secondary structure and sequence

TSD    TIR
5'



3'
TA       T    ATACACCCAAAAACCCAAAACTTTAG     TTTCCATCACATCGAATCTTGCGGCATATGCATAGAACATTAAATATAGATAAAAAAGATAACTAATTGCATAGTTTATCTGTAAATCACGAGACAAATTTTTTAAGCCTAGTTGCTCCATGATTGGATAATATTTGTCAAATAAAAACGAAAGTGCTACAGTGTCAAAATCCAAAAAGTTTTTGGATCTAAACAAAGCCTAAGCATCTTAATACTTTCGTTTGTATTTGACAAATATTGCCCAATCATATATTAATTAGACTCAAAAGATTCGTCTCGTAAATTACAGGTAAACTGTGTAATTAATTATTG
  AGGCCTT TTAG                          AAGAT                                                                                                                                                                                                                                                                                                                        
  ||||||| ||||                          |||||                                                                                                                                                                                                                                                                                                                         
  TCCGGAA AATT                          GCTTT                                                                                                                                                                                                                                                                                                                        
AA       C    ----------------------CAAA     AAAAAACCAAAACCAATGATATCATAAAAGCAAAAATAAACTATTTATAACAGGTTAATATCTGATTGATCCGAGTTTTCTAAGCAGAGGACTAAATATCCGTTTGACACGTTAATCAAAAACAAAAACAGATATAAATTATGAGATACGTACACGATATTCTAAGCTACACTGCCTATTAGAATTTTTCAAAAACCAAAATATCACTTGATTCCGGATCAAATCAAGGATTTTTTAAAACATTTGAAAAAGTCTAAAGGGCAGTGTAGCTTAGAACGCCGTGTACGTACTTCGTAATTTATATCTATTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End