Plant MITE

SE2850959

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9964
Sorghum bicolor
SE2850959
PIF/harbinger
To1
chromosome_9:56942506-56942742
TAA
AGGCCTTGTTTAGTTCGCAAAATTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TA                      T     GTTTTTA  TA   TAGC  -  -   TTTT  - T  CAAACATTGTCCAATCACGGAGTAACTAGGCTCAAAAGATTCATCTCACAAATTACAGATA
  AGGCCTTGTTTAGTTCGCAAAA TTTTT       GA  CTG    AT TT CGT    AT T GA                                                             
  |||||||||||||||||||||| |||||       ||  |||    || || |||    || | ||                                                              
  TCCGGAACAAATCAAGCGTTTT AAAAG       TT  CTA    AG GG AGT    GT G CT                                                             
AA                      T     -------  --   ----  G  C   ----  A -  TAGAAACTAGCGTACGTACCTCATAATTTATATCTGTTTTTATTTTTGATTGACGTGTCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850959

TAAGGCCTTGTTTAGTTCGCAAAATTTTTTGTTTTTAGATACTGTAGCATTTCGTTTTTATTTGACAAACATTGTCCAATCACGGAGTAACTAGGCTCAAAAGATTCATCTCACAAATTACAGATAAACTGTGCAGTTAGTTTTTATTTTTGTCTATATTTAATACTCCATGCATGCGATCAAAGATTCGATGTGACGGGGAATCTTGAAAATTTTTGCGAACTAAACAAGGCCTAA

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