SE2850960

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9965
  • Sorghum bicolor
  • SE2850960
  • PIF/harbinger
  • To19
  • chromosome_4:13371900-13372116
  • TAA
  • AGGGGGTGTTTGGGACTGCTCTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                        TCCACGTTTTTC           ----      TTTAGCCAAACGGTTTTAGCTCCACGCACTCAGTTCGAGGAAAAAGTGTGGAGTTGT
  AGGGGGTGTTTGGGACTGCTCTGC            AGCTCTGCTTC    CCGTTT                                                         
  ||||||||||||||||||||||||            |||||||||||    ||||||                                                          
  TCCCCCACAAACCCTGACGAGATG            TTGAGACGAGG    TGAGGT                                                         
AA                        -----------T           TATT      GGTACCTCGTCGAGGTGTTTTTTAACCTCAAACACCTCATGGAGAAATCCACGAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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