SE2850973

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9978
  • Sorghum bicolor
  • SE2850973
  • PIF/harbinger
  • To50
  • chromosome_4:45763644-45763947
  • TAA
  • AGAGCATCTCCAAGAGCCTTTCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                C       AATCTC    C   ------   CATCATTTGGAGAGTCATTTACATAAAAATCGCTTTTTATATCTTTCCACTCTCCAACAATTTTGCTAAATCTCATGTGCACTCTAGAGAGTCATTCTTGTCTTCTATA
  AGAGCATCTCCAAGAG CTTTCTA      ACTC CTA      AAT                                                                                                             
  |||||||||||||||| |||||||      |||| |||      |||                                                                                                              
  TCTCGTAGAGGTTCTC GAGAGAT      TAAG AAG      AGA                                                                                                             
AA                T       -----A    -   GATATA   AGGATTTACAATCCTTATCTCTAAAACTACTTTTTAATGAGAGGTTGTCGAAGAGATTTACCAGTAGGTTTATATCGGTAACAGATAAGACTTAAAAAGCGATCGGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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