SE2850974

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9979
  • Sorghum bicolor
  • SE2850974
  • PIF/harbinger
  • To4
  • chromosome_3:14618215-14618460
  • TAA
  • AGGCCTTGTTTAGTTTTTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                      TTTTGGAAA      ------ACTGT   A  TTC  --     -- - T  CAAATATTGTCCAATTATAGACTAACTAGGCTTAAAAGATTCGTCTCGCAAATTATAGA
  AGGCCTTGTTTAGTTTTTTTTT         AAGACC           AGC CT   GT  TTGTA  T G GA                                                           
  ||||||||||||||||||||||         ||||||           ||| ||   ||  |||||  | | ||                                                           T
  TCCGGAACAAATCAAGGAAGAG         TTTTGG           TTC TA   AG  AGTGT  C T AG                                                           
AA                      ---------      GTTTTAAAAAG   -  ---  AC     AG T -  AAACCTGTGTACGTACTTTGTAATTTATATCTATTTTTATTTTTGATTAATGTGTTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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