Plant MITE

SE2830976

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9981
Sorghum bicolor
SE2830976
hAT
Hat90
chromosome_3:11591329-11592034
AGCAGGAA
CAGGAACAGTGGCGGAGCC

Secondary structure and sequence

TSD TIR

5'

3'

AG AG AA             ---------        - -  --  AGGGGCCATGGCCCCCCCTAACATTTGTCAACAAAATTTTTTTACTAGTATAAATTAATGATTTTTATTTATATTAAAAGAGAAATATAACAATATTGTCATATATACTTATTAATATCATCTAGATAATAAAATCATACTCCCTATATTCTAAATTATATGTCATTCCAAAAAACTTAGAGAGTCAAAGTATCTCAAATTTGACCATCTTTATATGATAAGATAATAATATTTATGATACCAACTAAGTACCATTAGGTTCTTCATTAATTATATTTTTTTGTAGTATATCTATTTGCGACATAAATCTTT
  C  G  CAGTGGCGGAGCC         AGGGGGGG C TG  GC                                                                                                                                                                                                                                                                                                                        
  |  |  |||||||||||||         |||||||| | ||  ||                                                                                                                                                                                                                                                                                                                        A
  G  C  GTTACCGTCTCGG         TATATCGC C CG  TG                                                                                                                                                                                                                                                                                                                        
AA GA GA             TCTTTAATA        T C  GT  GTTTTTTTTTAGTTGATTAATTTTGACTCGTATTGATCACTGGTAGATAGAATTAAGTAGCTGAACTATATCCACGAGTGTGATATACATAAAATCCTAGTTTACACAATAAAACCACCATCTGCTATTTGGGAATTATCGTTCTACAAACTCTATTAAAACATTTAGAATTCTAGGCGCAGAGTCAAAAAGATTCCACAAAGTAACATAATAGATCAATAAACATGAAGGAGGTAGGGTTTAATATTTAGTAAGATTCTTAGAACCTTTTAGTTTCATAGAGTTCAAACTGGTTTTAATATATTTCTTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830976

AGCAGGAACAGTGGCGGAGCCAGGGGGGGCTGGCAGGGGCCATGGCCCCCCCTAACATTTGTCAACAAAATTTTTTTACTAGTATAAATTAATGATTTTTATTTATATTAAAAGAGAAATATAACAATATTGTCATATATACTTATTAATATCATCTAGATAATAAAATCATACTCCCTATATTCTAAATTATATGTCATTCCAAAAAACTTAGAGAGTCAAAGTATCTCAAATTTGACCATCTTTATATGATAAGATAATAATATTTATGATACCAACTAAGTACCATTAGGTTCTTCATTAATTATATTTTTTTGTAGTATATCTATTTGCGACATAAATCTTTATAATTCTTTATATAATTTTGGTCAAACTTGAGATACTTTGATTTTCCAAGATTCTTAGAATGATTTATAATTTGGGATGGAGGAAGTACAAATAACTAGATAATACAATGAAACACCTTAGAAAAACTGAGACGCGGATCTTAAGATTTACAAAATTATCTCAAACATCTTGCTATTAAGGGTTTATCGTCTACCACCAAAATAACACATTTGATCCTAAAATACATATAGTGTGAGCACCTATATCAAGTCGATGAATTAAGATAGATGGTCACTAGTTATGCTCAGTTTTAATTAGTTGATTTTTTTTTGGTTGGCCCTCGCTATATATAATTTCTGGCTCTGCCATTGAGCAGGAA

Copy Cancel