SE2830978

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9983
  • Sorghum bicolor
  • SE2830978
  • hAT
  • Hat65
  • chromosome_8:3076204-3076875
  • CTTAGGGA
  • CTTAGGGACAGTGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3'
        G CA T      GC  AAATTTGAA        AT    TTGCTAGTGTCTGGTGAGTCGTGTCACTTAGCTGTTGCCTCTAATCTCATGACCGACGTGCGCCCTCGCCAGTCGCCATGTAGGCATAGCATAGAGATAGAGGTTGCGCCCGTGCTGCACGTCCCGCGCTGCCAGGAGCTTAGGACACTGGGGACCAGTAGTGCCGCCACCACGTCATGCCTGGTCGGCTAGGGTTAGATATTTAGGAATGGGGATTATGGAATTGCCTCCTACTCATGCCTCGTTCACTCACATAAAAAAAATACTTTTATTATACATGCTACCATGTGCATAT
  CTTAGG A  G GGCGGA  CA         TCTTGGGT  TCCT                                                                                                                                                                                                                                                                                                       
  |||||| |  | ||||||  ||         ||||||||  ||||                                                                                                                                                                                                                                                                                                       T
  GGATTC T  C CCGCCT  GT         CCCATAAG  GACC                                                                                                                                                                                                                                                                                                       
AG      G -A -      AT  -------AT        --    ATAAGGGTCCTTATGGGTTGAAAAAATACGTGATTCATATATATTCATATAAATATATATACATATAGTTTATATAATCATAAAGATATAAATTGTTTATTTTAAAGAGAGAGTAAGTAAAATTAAATAAAAAATAAGTAAAAAAGTGTGTCTCGAGCTAATGGCTTTAATAAGATAAAACAACAAAGACGTTTACTCTTGAATTAATAAATAGAAGTATGGTGTATGTATAACTGAGTATGGTGATTTATAATCATGTTTAGAACAAAGATTTGAAAAAAGGGTCTATTTAGCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End