SE2810979

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9984
  • Sorghum bicolor
  • SE2810979
  • Tc1/Mariner
  • St39
  • chromosome_6:44762194-44762456
  • TA
  • TACTCCCTCTATTTCAAGCTATA

Secondary structure and sequence

TSD    TIR
5'



3'
          -A       C    -TATAAGA      A         T           A    ---C                       C  C  A    TC         CAT         C  G   TA
TACTCCCTCT  TTTCAAG TATA        TAGTTT GTTTTATTG AAGTCAAACTT TCTA    TTTTGGTTAAGTTTATAGAAAAA TA AC AACA  TACAATATT   TGGATACAC AT AAA  
||||||||||  ||||||| ||||        |||||| ||||||||| ||||||||||| ||||    ||||||||||||||||||||||| || || ||||  |||||||||   ||||||||| || |||  C
ATGAGGGAGA  AAAGTTT ATAT        ATCAAA CAAGATGGT TTTAGTTTGAA AGAT    GAAATTGATTCAAATATCTTTTT AT TG TTGT  ATGTTATAG   ATTTATGTG TA TTT  
          CA       C    TCAGTAAA      A         -           C    TATT                       -  A  A    -T         TTT         A  G   TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End