SE2850988

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9993
  • Sorghum bicolor
  • SE2850988
  • PIF/harbinger
  • To1
  • chromosome_4:2251330-2251578
  • TTA
  • AGGCCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               ACAC        --CCAAAAC    C  -------  TTCTCCATCACATCGAAACTTGCGGTACATGCATGGAACATTAAATATAGATAAAAAAGATAATTAATTACACAGTT
  AGGCCTTGTTTAGAT    CCAAAAAT         TTTA AA       GA                                                                             
  |||||||||||||||    ||||||||         |||| ||       ||                                                                              
  TCCGGAACAAATCTA    GGTTTTTG         AAAC GT       TG                                                                             
AT               ----        AAAAACTTA    T  GACATCG  AAAACAAAAATAAACTGTTTGTAATAGGTTAGTACCTCGTTGATCCGAATTTTCTAAGCAGAGCACTAAATGTCCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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