Plant MITE

SE2830989

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9994
Sorghum bicolor
SE2830989
hAT
Hat42
chromosome_3:9001118-9001404
GTTAAGCG
GTTAAGCGCAGGGACGAAGCCAG

Secondary structure and sequence

TSD TIR

5'

3'

    A   G  G         C  AA  - A       AGGGGCTGGACAAAATTGCTACATTGATTTAACTTTACTATAACCCCTCACAATAGAAAAAAAATATATTAGCTTCAAGTAGTCTTATATTAATTCACAAAATATATC
 GTT AGC CA GGACGAAGC AG  AA A TTATAGG                                                                                                            
 ||| ||| || ||||||||| ||  || | |||||||                                                                                                             
 CGA TTG GT CCTGCTTCG TC  CC C CCCGATC                                                                                                            
G   A   -  A         A  -G  A -       CCCCGAGATCGGGGGGATGTCGACGACTAAGTCACCTCGAAGATCACAAAAAGAAGATTAAAATCTGTATTTAAATATTCTATACCATCCGACTCTAGAAATAAAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830989

GTTAAGCGCAGGGACGAAGCCAGAAAAAATTATAGGAGGGGCTGGACAAAATTGCTACATTGATTTAACTTTACTATAACCCCTCACAATAGAAAAAAAATATATTAGCTTCAAGTAGTCTTATATTAATTCACAAAATATATCTAAAAATAAAGATCTCAGCCTACCATATCTTATAAATTTATGTCTAAAATTAGAAGAAAAACACTAGAAGCTCCACTGAATCAGCAGCTGTAGGGGGGCTAGAGCCCCCTAGCCCCACCGCTAGCTTCGTCCATGGTTAAGCG

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