SE2850990

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9995
  • Sorghum bicolor
  • SE2850990
  • PIF/harbinger
  • To1
  • chromosome_2:69654043-69654300
  • TGG
  • GGCCTTGTTTAGTTTCAAAATTTTTGGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TGGCATGATAAG                -    TT   G       AAGCAC   A   CTTTCGTTTGTATTTGACAAATATTGTCCAATCATAGACTAATTAGACTCAAAAGATTTGTCTCGCAAATTACAGA
            GGCCTTGTTTAGTTTC AAAA  TTT GCAAAAT      TGT GCA                                                                            
            |||||||||||||||| ||||  ||| |||||||      ||| |||                                                                             
            CCGGAACAAATCAAGG TTTT  AAA CGTTTTA      TCT AAG                                                                            
         GAA                G    TT   A       -AAAAG   -   GGGCAGTGTAGCTTAGAACACCGTGTACATACCTCGTAATTTATATCTATTTTTGTTATTGATTAATGTGTCAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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