SE2850992

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9997
  • Sorghum bicolor
  • SE2850992
  • PIF/harbinger
  • To98
  • chromosome_4:1401229-1401593
  • TTA
  • AGGGCAACTCCAACCAATCTCTCAAATTTTGCCCCTCTATTCCT

Secondary structure and sequence

TSD    TIR
5'



3'
TT             C   T    CAA    -T    C  TAT    TCAAA      TCC    TC     ------TTC     CTACTTCTCAGGATACTCCAACTGATCCCCTAATTTTCCCTGCTTTTACACTGTATCGTCATGGATCCTATTTATTGGTCCCACTTGTCAGCTTTATGGAAGAG
  AGGGCAACTCCAA CAA CTCT   ATTT  GCCC TC   TCCT     TGAGAG   CTCA  CATAT         ATCCT                                                                                                        
  ||||||||||||| ||| ||||   ||||  |||| ||   ||||     ||||||   ||||  |||||         |||||                                                                                                        A
  TCCCGTTGAGGTT GTT GAGG   TGAA  CGGG AG   AGGA     ACTCTC   GAGT  GTGTA         GAGGT                                                                                                        
AT             A   T    --A    CT    -  --T    -TAAA      ---    TT     TTTATTGGA     TGGTTTGGGGATAAGTTCGGGGTTACCTACTCCCTGAGAGTAAAGAGAGAGGACTTGAGGGTCTACATCCTCAGGGAGTAGGAGAGGGAGTAGACGAAGGAAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End