SE2850996

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10001
  • Sorghum bicolor
  • SE2850996
  • PIF/harbinger
  • To2
  • chromosome_3:67695129-67695681
  • TTA
  • AGGGGGTGTTTAGTTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                  CATAGAA           -   TGCCAACTACTTTGGAGTGATGAAATGCAAAATGCCAAAATTTTCAGGGTCATGTTTAGGCCTTGTTTAGTTCCGAAAAATTTTAGGAAATGGACACTGTAGCACTTTCGTTTGTATTTGACAAATATTGTCCAATCATGAACTAACTAGACTCAAAAGATTCGTCTCGTCAATTTCGACCAAACTGTGCAATTAGTTTTTATTTTCGTCTATATTTAATACTCCATGCATGCGT
  AGGGGGTGTTTAGTTCCC       TTCAAAATGCA AAA                                                                                                                                                                                                                                           
  ||||||||||||||||||       ||||||||||| |||                                                                                                                                                                                                                                            
  TCCCCCACAAATCAAGGG       AGGTTTTTTTA ACC                                                                                                                                                                                                                                           
AT                  TAAAAAA           A   CAAAACCAGGTAGTAAAACGTTTTACCTTGATTTGTGGTATGTTTTAAAAACCGTTTTTCCATCAATAAGAGGTAAAACCTAAAACCGGAGTTCTCCGGTTTTTTTGGGTTTTAACTCGGAGTTCTCCGAAGTACTGTTGTTATTTAAGACGTAAAACCTACCTTGATTCCGGAACAAATGAAGGGTCTTTTAAAACGTTTTAAAAAGTGTAAGGGGCAGTGTAGCTTAGAAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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