Plant MITE

SE2830997

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10002
Sorghum bicolor
SE2830997
hAT
Hat47
chromosome_9:51114405-51115116
GCTGCGAT
TGCGATTAAAGTTGAAAACAGATGGGA

Secondary structure and sequence

TSD TIR

5'

3'

GC    A    A                 TAA     GTTCCGTCCGCAACCGTATACCGTATCTTCCCGCTCGTTTTCGTTTTTACGGGATAAACGGAAACGGGACCGAAAACGGGATAGATTAAAGCGGGAGCGGGATCGAAAACGGTAGAGCGTTTGTCCGTCCGTATTTGCGGAATCCCGTTTTTTACCGGGATATCCCGTTTTCTATCCCGTTTTTCATAAAAACGGGAAAGTAGCCCAACATAGTCCCTAAGCCCAATATGGCCCAAAATGTCTCTTGTCTTATGTGATGTATGGATAATTTATATTTGTGTGAATTGTGATCTATGAACTATGGATATGTTCTTATGCG
  TGCG TTAA GTTGAAAACAGATGGGA   ATCCC                                                                                                                                                                                                                                                                                                                               
  |||| |||| |||||||||||||||||   |||||                                                                                                                                                                                                                                                                                                                               A
  GCGT GATT CAACTTTTGTCTGCCTT   CTTGC                                                                                                                                                                                                                                                                                                                               
TA    C    C                 -TG     CTTTTAGCGAGATAGCAAAAGTAAAAGTATAAAAATCTGCTTTTGCCTTCGCCTTCGGCTGTTGGCCCTCGCTTTTGCCATCGCCCTATTTGCCATTATGCTTTTGCCCATTTGTGCTAGCTTTTATCTGCCTTTGCTCGCCATTCACTTTTAAGTTTGGCCTTGTACATTCGGCGTATACTATCGCGTTTATGTCTCTGGTTTTACATTATGGTTTATAGTTTATACGTGACTGGTCACTGATCACTGGTGTAATTATGTTATGGTATATAGGTATCAGGTATCTAGTATTAAGTGTGTTTATATTTAATAGGTATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830997

GCTGCGATTAAAGTTGAAAACAGATGGGATAAATCCCGTTCCGTCCGCAACCGTATACCGTATCTTCCCGCTCGTTTTCGTTTTTACGGGATAAACGGAAACGGGACCGAAAACGGGATAGATTAAAGCGGGAGCGGGATCGAAAACGGTAGAGCGTTTGTCCGTCCGTATTTGCGGAATCCCGTTTTTTACCGGGATATCCCGTTTTCTATCCCGTTTTTCATAAAAACGGGAAAGTAGCCCAACATAGTCCCTAAGCCCAATATGGCCCAAAATGTCTCTTGTCTTATGTGATGTATGGATAATTTATATTTGTGTGAATTGTGATCTATGAACTATGGATATGTTCTTATGCGATGTATGGATAATTTATATTTGTGTGAATTATGATCTATGGACTATGGATATATGGTATTGTATTAATGTGGTCACTAGTCACTGGTCAGTGCATATTTGATATTTGGTATTACATTTTGGTCTCTGTATTTGCGCTATCATATGCGGCTTACATGTTCCGGTTTGAATTTTCACTTACCGCTCGTTTCCGTCTATTTTCGATCGTGTTTACCCGTTTTCGTATTACCGTTTATCCCGCTACCGTTTTCGCTCCCGGTTGTCGGCTTCCGCTTCCGTTTTCGTCTAAAAATATGAAAATGAAAACGATAGAGCGATTTTCCGTTCGTTTCCGTCTGTTTTCAACCTTAGCTGCGAT

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