SE2851000

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10005
  • Sorghum bicolor
  • SE2851000
  • PIF/harbinger
  • To1
  • chromosome_3:7795407-7795644
  • TAA
  • AGGCCTTGTTTAGTTGGCAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               G       --     -  TTTTGGCTACTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGAAGTAACTAGGCTCAAAAGATTCATCTCATAA
  AGGCCTTGTTTAGTT GCAAAAA  CTTTG GT                                                                                     
  ||||||||||||||| |||||||  ||||| ||                                                                                     A
  TCCGGAACAAATCAA CGTTTTT  AAGTT TA                                                                                     
AA               G       AA     C  AAAGGCAGTGTAGCTTAGAAACCAGCGTACGTACCTCGTAATTTATATCTATTTTTATTTTTGATTAACGTGTCAAATGGACATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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