SE2851001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10006
  • Sorghum bicolor
  • SE2851001
  • PIF/harbinger
  • To1
  • chromosome_9:51628398-51628646
  • TCA
  • AGGCCTTGTTTAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TC              --       AAATTTCGGATTTCGCTACTGTAGCACTTTCGTTTTTATTTGACAAATATTGTCCAATCATGAACTAACTAGGATCAAAAGATTCGTCTCGTGATTTACA
  AGGCCTTGTTTAGT  TCCGAAA                                                                                                    
  ||||||||||||||  |||||||                                                                                                    G
  TCCGGAACAAATCA  TGGGGCT                                                                                                    
AC              AG       TTAGGTTTTTCAAAAGTTCTAAAGGGCAGTGTAGCTTAGAACGCCGTGTACGTAATTCGTAATTTATATCTGCTTTTGTTTTTGATTAATGTGTCAAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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