Plant MITE

SE2811002

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10007
Sorghum bicolor
SE2811002
Tc1/Mariner
St1
chromosome_2:10560306-10560544
TA
TACTCCCTCCGTCCCAAAATAAGTGTCGT

Secondary structure and sequence

TSD TIR

5'

3'

                   TA        ---------   -  CTTCCCGAGAAATAACTTTAGTTAAATATATAGTAAAAAATATTAATATTTATAATACATAATTAATATCATTGGAAAGA
TACTCCCTCCGTCCCAAAA  AGTGTCGT         TTT CG                                                                                
|||||||||||||||||||  ||||||||         ||| ||                                                                                T
ATGAGGGAGGCAGGGTTTT  TCACAGCA         AGC CG                                                                                
                   TC        AAATCCAAA   A  GTGTTCAAACTGAGCTAAACATCTTTTATACACGTTATAAATATAGAGATTTATTTAAACAATTTTTTGATCTGAATTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2811002

TACTCCCTCCGTCCCAAAATAAGTGTCGTTTTCGCTTCCCGAGAAATAACTTTAGTTAAATATATAGTAAAAAATATTAATATTTATAATACATAATTAATATCATTGGAAAGATCTTTAAGTCTAGTTTTTTAACAAATTTATTTAGAGATATAAATATTGCACATATTTTCTACAAATCGAGTCAAACTTGTGGCACGAAAACCTAAAACGACACTCTTTTTGGGACGGAGGGAGTA

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