SE2851005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10010
  • Sorghum bicolor
  • SE2851005
  • PIF/harbinger
  • To2
  • chromosome_3:585609-585856
  • TAA
  • AGGCCTTGTTTAGTTCCGAAAAGATTTCAGATTTC

Secondary structure and sequence

TSD    TIR
5'



3'
TA               ----------       GA     -      G  A        - TTT  TT   --A  TGACAAATATTATCTACTTATGGATTAACTAGGCTCAAAAGATTCATCTCGTGATTT
  AGGCCTTGTTTAGTT          CCGAAAA  TTTCA GATTTC GT CTGTAGCA T   TG  TTT   TT                                                         
  |||||||||||||||          |||||||  ||||| |||||| || |||||||| |   ||  |||   ||                                                         A
  TCCGGAACAAATCAA          GGTTTTT  AAAGT CTAAGG GG CAGTGTAG T   TA  GAA   CG                                                         
AA               GTGGGTTTTT       GC     T      -  -        C ---  --   CTC  TGTACGTACTTCGTAATCTATATCTGCTTTTATTTTTGATTAATGTGTCAAACAGAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End