SE2851007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10012
  • Sorghum bicolor
  • SE2851007
  • PIF/harbinger
  • To23
  • chromosome_1:4116393-4116684
  • TAA
  • GGGGGTGTTTAGTTCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA    -              ---TTTT    CAAAAAAATTTGGGATTTGGCCCATCATTTTGCATAATGAAAACCATGCAAAATTTTTGGCAAAAAGGTGGCTATTCTCCATTTTCGATTTGGCCTCAAGAGGCCCAAAAAAACC
   GGGG GTGTTTAGTTCCCC       ATCC                                                                                                                   
   |||| ||||||||||||||       ||||                                                                                                                   C
   TCCC CACAAATCAAGGGG       ACGT                                                                                                                   
 AA    A              TATTTTT    TTTACGTTTTACGGTTGATGAAACCTTACTACTTTATGTTTTACGGTTTTAAAAGTCCCAATACAAATCAAGGTTGGTTTTACGTATTAAATAGCGGGAGTACTCCCGGAGAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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