SE2851012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10017
  • Sorghum bicolor
  • SE2851012
  • PIF/harbinger
  • To4
  • chromosome_4:6870464-6870700
  • TAA
  • AGGCCTTGTTTAGTTCGTGAAATTTTTTGGATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               -CGT         T      --     CTGTAGCACTTTCGGCTTTATTTGGCAATTATTATTCAATTATAGACTAACTAGGCTCAAAAGATTCATCTCGTAA
  AGGCCTTGTTTAGTT    GAAATTTTT GGATTT  TGCTA                                                                            
  |||||||||||||||    ||||||||| ||||||  |||||                                                                             
  TCCGGAACAAATCAA    TTTTAAAAG TCTAAG  ACAGT                                                                            
AA               AAGT         T      GA     GTAGCTTAGAACGCTGTGTACGTATTTCATAATTTATATCTATTTTTCTATCGATTAACGTGTCAAATGGACATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3