SE2851013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10018
  • Sorghum bicolor
  • SE2851013
  • PIF/harbinger
  • To100
  • chromosome_1:54334109-54334425
  • TAA
  • AGGGCCTGTTTGGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                ACCCCAACTAAAC       ACTAAAGTTTAGTCACTAAAATACCAAACACCCCCTCTAAAAGGGTCACTAAAGTTTAGTGGCTTTAGTAGATAAGAGGCTGCTAAAAGTGACTAAAGTGCAAAGATTACAGGGGATATCCCT
  AGGGCCTGTTTGGTTC             TTTAGTG                                                                                                                           
  ||||||||||||||||             |||||||                                                                                                                           T
  TCTCGGACAAACCAAG             CTAGGAT                                                                                                                           
AA                ------GAAATCA       GATCTCAAATCACTAGGGTGATTTCAAATCATCGTGAGACAAACCAAGACAAGTAATTTCTGGTGATTTTGTGATTTGTTTCTGATATAATGGGAATTAATTACGTTCGCTCCACCTTAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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