Plant MITE

SE2831019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10024
Sorghum bicolor
SE2831019
hAT
Hat1
chromosome_1:60280857-60281035
GGATTAAT
ATTAATCAGTGGCGAAGCTAGA

Secondary structure and sequence

TSD TIR

5'

3'

GG       --  T          G GCAAATTAGAGGGG       TAGCTTGTGGGTGCATAGACATCTTCCATAGGGGGTGCATATATGGT
  ATTAATC  AG GGCGAAGCTA A              GTGCACT                                               
  |||||||  || |||||||||| |              |||||||                                               G
  TAATTAG  TC CCGCTTCGAT T              TCCCACG                                               
         GG  C          G ------ACAATGAA       TTTACGTGGGGGTTTTAAATATTTTTGTCACTAATCCAGGTTTTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831019

GGATTAATCAGTGGCGAAGCTAGAGCAAATTAGAGGGGGTGCACTTAGCTTGTGGGTGCATAGACATCTTCCATAGGGGGTGCATATATGGTGAAATTTTGGACCTAATCACTGTTTTTATAAATTTTGGGGGTGCATTTGCACCCTAAGTAACATGTAGCTTCGCCCCTGGGATTAAT

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