Plant MITE

SE2831021

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10026
Sorghum bicolor
SE2831021
hAT
Hat11
chromosome_7:52272382-52272549
GCCTTGGG
CCTTGGGTAGGGGTGCAAATGAGTGATGTTTAGGTGCACCTCTAAACCTCTTTAGTTCAAATATTTATACTACTTCT

Secondary structure and sequence

TSD TIR

5'

3'

G  TT  G            T A     G                                      A          CCAAAA
 CC  GG TAGGGGTGCAAA G GTGAT TTTAGGTGCACCTCTAAACCTCTTTAGTTCAAATATTT TACTACTTCT      
 ||  || |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||       
 GG  CC ATCCCCACGTTT C CATTG AAATCCACGTGGAGGTTTGGAGAAATCAAGTTTATAAA ATGATGAAGA      
G  TT  G            C C     G                                      C          ATTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831021

GCCTTGGGTAGGGGTGCAAATGAGTGATGTTTAGGTGCACCTCTAAACCTCTTTAGTTCAAATATTTATACTACTTCTCCAAAAAAATTAAGAAGTAGTACAAATATTTGAACTAAAGAGGTTTGGAGGTGCACCTAAAGGTTACCCCTTTGCACCCCTAGCCTTGGG

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