SE2851028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10033
  • Sorghum bicolor
  • SE2851028
  • PIF/harbinger
  • To2
  • chromosome_1:1012744-1012992
  • GTA
  • GGCCTTGTTTACTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTA           C    ACCCAAAAACACAAAATTT       ---   CCCGTCACATCGAATCTTTAAACGCATGCATGGAGTATTAAATATAAACGAAAATAAAAGATAATTGCACAATTTGGTCGAAAT
   GGCCTTGTTTA TTCC                   TTCAAGA   TTC                                                                                    
   ||||||||||| ||||                   |||||||   |||                                                                                    T
   CCGGAACAAAT AAGG                   GCTTCAC   TTA                                                                                    
ATG           C    -------------------       TTT   AAGCACTGTGACATCGTGAAAGCAAACAAACACCATTAATAACAGGTTGGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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