Plant MITE

SE2851030

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10035
Sorghum bicolor
SE2851030
PIF/harbinger
To14
chromosome_1:56753473-56753721
TAA
AGGCCTTGTTTAGTTCCAAATTTTTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TA               -     TTT     C     AGGAATAG   C      --      ATTTGACAAATATTGTCCGATCATGGACTAACTAGGCTCAAAAGATTTGTCTCGCAAATTACAGA
  AGGCCTTGTTTAGTT CCAAA   TTTTG AAAAT        TAG ATTTTC  GTTTGT                                                                 
  ||||||||||||||| |||||   ||||| |||||        ||| ||||||  ||||||                                                                 C
  TCCGGAACAAATCAA GGTTT   AAAAC TTTTA        GTC TAAAGG  AGTGTA                                                                 
AA               A     TAT     A     ----AAGA   -      GT      TATTAGAACGCCGTGTATGTACTTAGTGATTTATATCTATTTTCTTTATTGATTAATGTGTCAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851030

TAAGGCCTTGTTTAGTTCCAAATTTTTTTGCAAAATAGGAATAGTAGCATTTTCGTTTGTATTTGACAAATATTGTCCGATCATGGACTAACTAGGCTCAAAAGATTTGTCTCGCAAATTACAGACAGACTGTGTAATTAGTTATTTCTTTTATCTATATTTAGTGATTCATGTATGTGCCGCAAGATTATATGTGATGGGAAATCTGAGAAATTTTACAAAATATTTTGGAAACTAAACAAGGCCTAA

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