SE2851033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10038
  • Sorghum bicolor
  • SE2851033
  • PIF/harbinger
  • To4
  • chromosome_4:55305441-55305688
  • TTA
  • AGGCCTTATTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT       A       ---       AATTTAGGTTTGGCTACTGTAGCACTTTCGTTTGTATTTGATAATTAGTGTCCAATTATGGACTAACTAGGCTCAAAAGATTGTCTCGTAAATTACAG
  AGGCCTT TTTAGTT   GATGAAA                                                                                                  
  ||||||| |||||||   |||||||                                                                                                  G
  TCCGGAA AAATCAA   TTTTAAA                                                                                                  
AT       C       GAG       AGGTTTTGAAAAAGTTCTAAAGAGCAGTTTAACTTAGAAATCTGCATACGTATTTCATAATTTATATCTTTTTATTATTATTGATTAACGTGTAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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