SE2851035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10040
  • Sorghum bicolor
  • SE2851035
  • PIF/harbinger
  • To3
  • chromosome_9:55900457-55900703
  • TTA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             -AT    -- T   TTTTGAATTTCGCTACTGTAGCACTTTCGTTTGTTTGTGGCAAGTATTGTCCAATCATAGACTAACTAGAGTCAAAAGATTCGTCTCGTGATTTAC
  AGGCCTTGTTTAG   GTGA  A TTT                                                                                                
  |||||||||||||   ||||  | |||                                                                                                A
  TCCGGAACAAATC   TGGG  T TTG                                                                                                
AT             AAG    TA -   GTTTTTCAAAAGTTCTAAGGGTAGTGTAGCTTATAACGCCGTATACGTACTTCGTAATTTATATCTGGTTTTGTTTTTGATTAATGTGTTAAACGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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