Plant MITE

SE2851037

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10042
Sorghum bicolor
SE2851037
PIF/harbinger
To14
chromosome_3:60109566-60109816
TTA
AGGCCTTGTTTAGTTCCGGAAAAATTTCAGATTTTTGGT

Secondary structure and sequence

TSD TIR

5'

3'

TT    C         ----       -------        -       G  A   T GCATTTTCGTTTGTTTATGGTAAATATTGTCCAATCATAAACTAACTAGGCTTAAAAGATTCGTCTCGTAAAT
  AGGC TTGTTTAGT    TCCGGAA       AAATTTCA GATTTTT GT ATG A                                                                         
  |||| |||||||||    |||||||       |||||||| ||||||| || ||| |                                                                         T
  TCCG AACAAATCA    AGGCTTT       TTTAAAGT CTAAAAG TA GTG T                                                                         
AT    C         AGTG       AATTTTT        T       G  -   - AGTTTAGAACACCGTGTACATACTTCGTGATTTATATCTTTTTTTTGTTTTTGATTAACGTGTCAAATAGACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851037

TTAGGCCTTGTTTAGTTCCGGAAAAATTTCAGATTTTTGGTAATGTAGCATTTTCGTTTGTTTATGGTAAATATTGTCCAATCATAAACTAACTAGGCTTAAAAGATTCGTCTCGTAAATTACAGATAAACTGTGCAATTAGTTTTTGTTTTTTTTCTATATTTAGTGCTTCATACATGTGCCACAAGATTTGATGTGATGGAAAATCTTGAAATTTTTTTTAATTTCGGAGTGAACTAAACAACGCCTTA

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