SE2851038

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10043
  • Sorghum bicolor
  • SE2851038
  • PIF/harbinger
  • To14
  • chromosome_6:1936574-1936824
  • TTG
  • GGGCCTTGTTTACTTCCTTAAATATTTTGTAAAATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               C TT   T              TTCAGATTTTTC  TCACATCGAATCTTTGCGGCACATGTATTAAGTATTAAATATAGATAAAAAAGATAAGTAATTACACAGTTTGTATGT
  GGGCCTTGTTTACTT C  AAA ATTTTGTAAAATGT            CG                                                                              
  ||||||||||||||| |  ||| ||||||||||||||            ||                                                                               
  TCCGGAACAAATGAA G  TTT TAAAATGTTTTACA            TG                                                                              
GT               C TT   -              ----------CT  TCATCGTAAAAGTAAACATAAACTGTTTATAACAGGTTAATATCCAATTGATCCGAGTTTTCTAAGTAGAGTGTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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