SE2851039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10044
  • Sorghum bicolor
  • SE2851039
  • PIF/harbinger
  • To4
  • chromosome_6:50620779-50621016
  • TAA
  • AGGCCTTGTTTAGTTTTCAAAAATTTTCAAGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -TC         CA     CCC    ACA  ------ AAT TTGCGGCACATGCATGAAGCATTAAATATAGACAAAAATAAAAACTAATTATGCAGTTTACCTGTAA
  AGGCCTTGTTTAGTTT   AAAAATTTT  AGATT   CGTC   TC      G   T                                                                   
  ||||||||||||||||   |||||||||  |||||   ||||   ||      |   |                                                                   A
  TCCGGAACAAATCAAA   TTTTTAAAA  TCTAA   AGCG   TG      T   G                                                                   
AA                CTC         --     ---    --A  ACATCG --- AAAGCAAACAAACACCGTTTATAATAGATTAGTATCTGATTGATCCTAGTTTTCTAAGCAGAGCGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3