Plant MITE

SE2831040

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10045
Sorghum bicolor
SE2831040
hAT
Hat6
chromosome_10:52895642-52895825
GACGCGTC
GACGCGTCCAGTGGCGGAGCACTCGGTAGGGCTAGGTGTGGCA

Secondary structure and sequence

TSD TIR

5'

3'

                   C  TC      --  T          ----   - C   ACCTCAAATTTGTTTTACTCTTCTTTATTCAGGTTGTG
GACGCGTCCAGTGGCGGAG AC  GGTAGG  GC AGGTGTGGCA    GCT G CAT                                      
||||||||||||||||||| ||  ||||||  || ||||||||||    ||| | |||                                      T
CTGCGCAGGTCACCGCCTC TG  CCATTT  TG TCCACACCGT    CAC G TTT                                      
                   C  -T      TT  T          TTCT   T -   CTAATTAATGAACGTGTTTTTAATTCTTGATTGTGTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2831040

GACGCGTCCAGTGGCGGAGCACTCGGTAGGGCTAGGTGTGGCAGCTGCCATACCTCAAATTTGTTTTACTCTTCTTTATTCAGGTTGTGTCATGTGTTAGTTCTTAATTTTTGTGCAAGTAATTAATCTTTGTCACTCTTTGCCACACCTTGTTTTTTACCTGTCCTCCGCCACTGGACGCGTC

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