SE2831042

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10047
  • Sorghum bicolor
  • SE2831042
  • hAT
  • Hat4
  • chromosome_8:34015765-34016056
  • TAGGCAGC
  • GCAGCTAGGGATGAAAACGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAG  AGC               ----     -   TT TCCGACCGTATTCGAGACCGAATTCGTTTAGAAGGGTTTAAATCTGTCTGTATCCGAGTCCGAATATTCAACATCCGATACCGTATCCGTATCCAAATACTTAAATCGTA
   GC   TAGGGATGAAAACGG    TACAG ATA  T                                                                                                              
   ||   |||||||||||||||    ||||| |||  |                                                                                                              T
   CG   ATCCCTACTTTTGCC    CTATG CTA  C                                                                                                              
CGA  GAT               TAGC     C   -- CTATAGTGGCTATAGTATAAACAAAAGTATAAAGATCAGCCTAAGCCTAAGCTTATACCTATTACAGTTAGTACAGCCTATTCTATACTAACCTACAGCTGTAGTATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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