SE2851044

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10049
  • Sorghum bicolor
  • SE2851044
  • PIF/harbinger
  • To13
  • chromosome_4:64903036-64903327
  • TAA
  • AGAGCAACTCCAACAACTTGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             CAA        -TTCTT  T  G   -G     TTA        ATAGCAAAAAGTAGGTTCCAACAGATATGCTATCTGGTTTTGTAAAATAGAAAGTTGGCTAACACTTGATTTTCGGTGGTCATATATA
  AGAGCAACTCCAA   CTTGGCTA      GT GT GAG  CCATT   GAATTTGC                                                                                        
  |||||||||||||   ||||||||      || || |||  |||||   ||||||||                                                                                         
  TCTCGTTGAGGTT   GAACCGAT      TA CA TTT  GGTAA   ATAGGTAA                                                                                        
AA             CTC        TTTAAT  T  G   GA     CAA        AACATTTTATCTTTTGACGAATTTTTTCTTCTTTAAATGTTGTCAGAACGATAAAATGTTTTAGTCTATCGATCACAGTCACCAACCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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