Plant MITE

SE2851045

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10050
Sorghum bicolor
SE2851045
PIF/harbinger
To4
chromosome_3:57696689-57696934
TAA
AGGCCTTGTTTAGTTCC

Secondary structure and sequence

TSD TIR

5'

3'

TA   C             CAAAAAAAA        TTT  --      T   ---  -   TCGAATCTTGTGGCACATGCATGGAACATTAAATATAAATAAAAAATAACTAATTATACAGTTTG
  AGG CTTGTTTAGTTCC         TACAAAAT   AA  AGATTC TCG   TC ACA                                                                 
  ||| |||||||||||||         ||||||||   ||  |||||| |||   || |||                                                                 C
  TCC GAACAAATCAAGG         ATGTTTTA   CT  GATATC ATG   AC AAC                                                                 
AA   A             TTAAAAAAA        --T  GT      -   AAA  A   ATAAACTGTTTATAACAGGTTAGTACATGATTGATCCGAGTTTTCTAAGCAGAGCATTTAATGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851045

TAAGGCCTTGTTTAGTTCCCAAAAAAAATACAAAATTTTAAAGATTCTTCGTCACATCGAATCTTGTGGCACATGCATGGAACATTAAATATAAATAAAAAATAACTAATTATACAGTTTGCCTGTAATTTACGAGACGAATCTTTTGAGCCTAGTTAGTACATGATTGGACAATATTTGTCAAATACAAACAAAAGTACTATAGTGTCTATTTTGTAAAAAAAATTGGAACTAAACAAGACCTAA

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