Plant MITE

SE2851047

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10052
Sorghum bicolor
SE2851047
PIF/harbinger
To1
chromosome_9:39749358-39749604
CAA
GGCCTTGTTTAGTTTC

Secondary structure and sequence

TSD TIR

5'

3'

CAA                GAAG  -   TT    -   GGCACTGTAGCACTTTCGTTTTTATTTGACAAATATTATCCAATTATGGAGTAACTACACTTAAAAATTCATCTCGTGATTTACAGGT
   GGCCTTGTTTAGTTTC    AT ATT  GGTT TTC                                                                                        
   ||||||||||||||||    || |||  |||| |||                                                                                         
   CCGGAACAAATCAAGG    TG CTT  TAGG TTT                                                                                        
AAC                ---G  G   --    T   TCAAAAGTTCTAAAGGGCAGTGTAGCTTAGAACGCCGTGTACGTACTTCGTGATTTAAATCTGCTTTTGTTTTGATTAATGTGTCAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2851047

CAAGGCCTTGTTTAGTTTCGAAGATATTTTGGTTTTCGGCACTGTAGCACTTTCGTTTTTATTTGACAAATATTATCCAATTATGGAGTAACTACACTTAAAAATTCATCTCGTGATTTACAGGTAAACTGTGTAATTAGTTTTGTTTTCGTCTAAATTTAGTGCTTCATGCATGTGCCGCAAGATTCGATGTGACGGGAAATCTTGAAAACTTTTTGGATTTCGGTGGGAACTAAACAAGGCCCAA

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