SE2851049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10054
  • Sorghum bicolor
  • SE2851049
  • PIF/harbinger
  • To14
  • chromosome_7:52643499-52643746
  • TAA
  • AGGCCTTGTTTAGTTCCAAAATTTTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               -       T           ------AG   T   AGTACTTTCGTTTGTGTTTGACAAATATTGTTCAATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGCAAATTA
  AGGCCTTGTTTAGTT CCAAAAT TTTTGCAAAAT        GAA AGT                                                                            
  ||||||||||||||| ||||||| |||||||||||        ||| |||                                                                             
  TCCGGAACAAATCAA GGTTTTA AAAACGTTTTA        AAG GGG                                                                            
AA               A       T           AAAAGTAT   -   TAGTGTAGCTTAGAACGTCGTGTACGTACCTCGTGATTTATATCTATCTCTTTATTGATTAATATGTCAAATGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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